Multiqc report of all the 166 samples

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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.6.dev0

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        Multiqc report of all the 166 samples

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2019-04-19, 11:14 based on data in: /nlustre/users/junior/OmegaFastq


        General Statistics

        Showing 332/332 rows and 3/5 columns.
        Sample Name% Dups% GCM Seqs
        BRB101_S20_L001_R1_001
        56.0%
        46%
        1.1
        BRB101_S20_L001_R2_001
        51.2%
        46%
        1.1
        BRB102_S24_L001_R1_001
        61.2%
        44%
        1.3
        BRB102_S24_L001_R2_001
        57.7%
        44%
        1.3
        BRB104_S21_L001_R1_001
        59.6%
        46%
        1.2
        BRB104_S21_L001_R2_001
        55.8%
        46%
        1.2
        BRB106_S19_L001_R1_001
        47.0%
        42%
        0.7
        BRB106_S19_L001_R2_001
        43.4%
        42%
        0.7
        BRB108_S1_L001_R1_001
        44.3%
        42%
        0.6
        BRB108_S1_L001_R2_001
        45.2%
        42%
        0.6
        BRB10_S11_L001_R1_001
        50.2%
        43%
        0.8
        BRB10_S11_L001_R2_001
        51.4%
        43%
        0.8
        BRB111_S2_L001_R1_001
        54.7%
        43%
        1.1
        BRB111_S2_L001_R2_001
        54.8%
        43%
        1.1
        BRB113_S3_L001_R1_001
        58.8%
        42%
        1.3
        BRB113_S3_L001_R2_001
        57.1%
        43%
        1.3
        BRB114_S22_L001_R1_001
        55.9%
        46%
        1.1
        BRB114_S22_L001_R2_001
        52.6%
        46%
        1.1
        BRB118_S20_L001_R1_001
        45.3%
        42%
        0.6
        BRB118_S20_L001_R2_001
        39.8%
        42%
        0.6
        BRB11_S12_L001_R1_001
        44.1%
        41%
        0.5
        BRB11_S12_L001_R2_001
        47.2%
        42%
        0.5
        BRB120_S23_L001_R1_001
        59.3%
        45%
        1.3
        BRB120_S23_L001_R2_001
        56.7%
        45%
        1.3
        BRB121_S24_L001_R1_001
        56.5%
        45%
        1.1
        BRB121_S24_L001_R2_001
        53.4%
        45%
        1.1
        BRB122_S4_L001_R1_001
        40.9%
        41%
        0.4
        BRB122_S4_L001_R2_001
        43.0%
        41%
        0.4
        BRB123_S5_L001_R1_001
        47.8%
        43%
        0.7
        BRB123_S5_L001_R2_001
        49.0%
        43%
        0.7
        BRB124_S21_L001_R1_001
        54.3%
        43%
        0.9
        BRB124_S21_L001_R2_001
        50.9%
        43%
        0.9
        BRB125_S22_L001_R1_001
        50.3%
        42%
        0.8
        BRB125_S22_L001_R2_001
        46.9%
        42%
        0.8
        BRB129_S6_L001_R1_001
        54.4%
        43%
        1.0
        BRB129_S6_L001_R2_001
        55.6%
        43%
        1.0
        BRB130_S16_L001_R1_001
        57.3%
        45%
        1.0
        BRB130_S16_L001_R2_001
        54.9%
        45%
        1.0
        BRB131_S17_L001_R1_001
        60.2%
        44%
        1.3
        BRB131_S17_L001_R2_001
        57.1%
        44%
        1.3
        BRB132_S7_L001_R1_001
        44.9%
        42%
        0.6
        BRB132_S7_L001_R2_001
        46.1%
        42%
        0.6
        BRB137_S1_L001_R1_001
        44.2%
        44%
        0.7
        BRB137_S1_L001_R2_001
        45.8%
        44%
        0.7
        BRB138_S2_L001_R1_001
        47.4%
        44%
        0.7
        BRB138_S2_L001_R2_001
        47.8%
        45%
        0.7
        BRB139_S3_L001_R1_001
        52.1%
        45%
        0.9
        BRB139_S3_L001_R2_001
        50.1%
        45%
        0.9
        BRB142_S4_L001_R1_001
        33.9%
        44%
        0.3
        BRB142_S4_L001_R2_001
        36.3%
        44%
        0.3
        BRB143_S8_L001_R1_001
        55.4%
        44%
        1.0
        BRB143_S8_L001_R2_001
        52.9%
        44%
        1.0
        BRB146_S5_L001_R1_001
        44.6%
        45%
        0.6
        BRB146_S5_L001_R2_001
        45.9%
        45%
        0.6
        BRB147_S6_L001_R1_001
        49.2%
        44%
        0.8
        BRB147_S6_L001_R2_001
        51.0%
        44%
        0.8
        BRB148_S9_L001_R1_001
        53.5%
        43%
        1.0
        BRB148_S9_L001_R2_001
        53.3%
        43%
        1.0
        BRB14_S3_L001_R1_001
        53.4%
        44%
        0.9
        BRB14_S3_L001_R2_001
        52.5%
        44%
        0.9
        BRB150_S18_L001_R1_001
        60.2%
        45%
        1.3
        BRB150_S18_L001_R2_001
        57.0%
        45%
        1.3
        BRB152_S10_L001_R1_001
        47.8%
        43%
        0.7
        BRB152_S10_L001_R2_001
        48.5%
        43%
        0.7
        BRB153_S23_L001_R1_001
        55.3%
        43%
        1.1
        BRB153_S23_L001_R2_001
        51.2%
        43%
        1.1
        BRB154_S7_L001_R1_001
        46.2%
        44%
        0.7
        BRB154_S7_L001_R2_001
        48.2%
        44%
        0.7
        BRB156_S8_L001_R1_001
        50.0%
        45%
        0.8
        BRB156_S8_L001_R2_001
        48.2%
        45%
        0.8
        BRB158_S9_L001_R1_001
        57.2%
        45%
        1.2
        BRB158_S9_L001_R2_001
        55.0%
        45%
        1.2
        BRB160_S11_L001_R1_001
        43.5%
        42%
        0.5
        BRB160_S11_L001_R2_001
        45.6%
        42%
        0.5
        BRB161_S24_L001_R1_001
        44.5%
        42%
        0.6
        BRB161_S24_L001_R2_001
        40.0%
        42%
        0.6
        BRB162_S12_L001_R1_001
        60.1%
        44%
        1.3
        BRB162_S12_L001_R2_001
        56.4%
        44%
        1.3
        BRB166_S1_L001_R1_001
        40.7%
        40%
        0.4
        BRB166_S1_L001_R2_001
        42.0%
        41%
        0.4
        BRB167_S19_L001_R1_001
        60.6%
        44%
        1.3
        BRB167_S19_L001_R2_001
        54.9%
        44%
        1.3
        BRB169_S2_L001_R1_001
        46.8%
        42%
        0.6
        BRB169_S2_L001_R2_001
        45.9%
        42%
        0.6
        BRB170_S13_L001_R1_001
        61.2%
        44%
        1.4
        BRB170_S13_L001_R2_001
        57.2%
        44%
        1.4
        BRB171_S3_L001_R1_001
        52.8%
        42%
        0.9
        BRB171_S3_L001_R2_001
        46.4%
        42%
        0.9
        BRB172_S4_L001_R1_001
        33.6%
        39%
        0.2
        BRB172_S4_L001_R2_001
        35.6%
        40%
        0.2
        BRB173_S5_L001_R1_001
        34.6%
        41%
        0.3
        BRB173_S5_L001_R2_001
        35.4%
        41%
        0.3
        BRB174_S6_L001_R1_001
        36.1%
        41%
        0.4
        BRB174_S6_L001_R2_001
        37.0%
        41%
        0.4
        BRB175_S7_L001_R1_001
        39.4%
        41%
        0.4
        BRB175_S7_L001_R2_001
        40.7%
        42%
        0.4
        BRB177_S8_L001_R1_001
        52.9%
        43%
        0.9
        BRB177_S8_L001_R2_001
        49.1%
        43%
        0.9
        BRB17_S15_L001_R1_001
        58.6%
        44%
        1.2
        BRB17_S15_L001_R2_001
        55.6%
        44%
        1.2
        BRB182_S14_L001_R1_001
        64.0%
        44%
        1.7
        BRB182_S14_L001_R2_001
        58.2%
        44%
        1.7
        BRB185_S9_L001_R1_001
        32.5%
        42%
        0.3
        BRB185_S9_L001_R2_001
        29.6%
        42%
        0.3
        BRB186_S10_L001_R1_001
        50.9%
        43%
        0.9
        BRB186_S10_L001_R2_001
        48.9%
        43%
        0.9
        BRB187_S15_L001_R1_001
        57.0%
        44%
        1.1
        BRB187_S15_L001_R2_001
        54.1%
        44%
        1.1
        BRB188_S16_L001_R1_001
        57.0%
        44%
        1.0
        BRB188_S16_L001_R2_001
        54.6%
        44%
        1.0
        BRB189_S17_L001_R1_001
        61.2%
        44%
        1.4
        BRB189_S17_L001_R2_001
        57.7%
        44%
        1.4
        BRB18_S4_L001_R1_001
        29.6%
        41%
        0.3
        BRB18_S4_L001_R2_001
        31.7%
        41%
        0.3
        BRB190_S11_L001_R1_001
        27.4%
        41%
        0.2
        BRB190_S11_L001_R2_001
        27.7%
        41%
        0.2
        BRB191_S12_L001_R1_001
        29.9%
        40%
        0.2
        BRB191_S12_L001_R2_001
        32.0%
        40%
        0.2
        BRB193_S18_L001_R1_001
        60.8%
        44%
        1.4
        BRB193_S18_L001_R2_001
        57.4%
        44%
        1.4
        BRB194_S19_L001_R1_001
        60.1%
        44%
        1.3
        BRB194_S19_L001_R2_001
        55.1%
        44%
        1.3
        BRB197_S10_L001_R1_001
        48.1%
        45%
        0.8
        BRB197_S10_L001_R2_001
        47.9%
        45%
        0.8
        BRB199_S20_L001_R1_001
        57.6%
        44%
        1.0
        BRB199_S20_L001_R2_001
        55.4%
        44%
        1.0
        BRB19_S5_L001_R1_001
        45.8%
        43%
        0.7
        BRB19_S5_L001_R2_001
        45.8%
        43%
        0.7
        BRB1_S9_L001_R1_001
        57.2%
        43%
        1.1
        BRB1_S9_L001_R2_001
        55.3%
        43%
        1.1
        BRB200_S20_L001_R1_001
        60.9%
        44%
        1.2
        BRB200_S20_L001_R2_001
        57.9%
        44%
        1.2
        BRB201_S21_L001_R1_001
        55.2%
        44%
        0.9
        BRB201_S21_L001_R2_001
        52.3%
        44%
        0.9
        BRB203_S11_L001_R1_001
        43.2%
        45%
        0.5
        BRB203_S11_L001_R2_001
        44.2%
        45%
        0.5
        BRB205_S22_L001_R1_001
        56.6%
        44%
        1.0
        BRB205_S22_L001_R2_001
        53.3%
        44%
        1.0
        BRB207_S12_L001_R1_001
        40.3%
        43%
        0.5
        BRB207_S12_L001_R2_001
        43.5%
        43%
        0.5
        BRB208_S21_L001_R1_001
        62.4%
        44%
        1.5
        BRB208_S21_L001_R2_001
        59.2%
        44%
        1.5
        BRB20_S6_L001_R1_001
        33.7%
        41%
        0.3
        BRB20_S6_L001_R2_001
        34.6%
        41%
        0.3
        BRB215_S23_L001_R1_001
        56.2%
        45%
        1.0
        BRB215_S23_L001_R2_001
        51.8%
        45%
        1.0
        BRB21_S7_L001_R1_001
        36.7%
        42%
        0.4
        BRB21_S7_L001_R2_001
        38.1%
        42%
        0.4
        BRB220_S13_L001_R1_001
        52.9%
        42%
        0.9
        BRB220_S13_L001_R2_001
        48.3%
        42%
        0.9
        BRB224_S14_L001_R1_001
        54.4%
        43%
        1.0
        BRB224_S14_L001_R2_001
        49.4%
        43%
        1.0
        BRB225_S15_L001_R1_001
        60.0%
        43%
        1.2
        BRB225_S15_L001_R2_001
        51.7%
        43%
        1.2
        BRB226_S16_L001_R1_001
        44.1%
        43%
        0.6
        BRB226_S16_L001_R2_001
        40.7%
        43%
        0.6
        BRB229_S17_L001_R1_001
        48.5%
        42%
        0.7
        BRB229_S17_L001_R2_001
        45.3%
        42%
        0.7
        BRB233_S1_L001_R1_001
        51.8%
        43%
        0.9
        BRB233_S1_L001_R2_001
        52.6%
        43%
        0.9
        BRB234_S2_L001_R1_001
        59.7%
        43%
        1.2
        BRB234_S2_L001_R2_001
        57.5%
        43%
        1.2
        BRB236_S13_L001_R1_001
        56.5%
        47%
        1.1
        BRB236_S13_L001_R2_001
        51.8%
        47%
        1.1
        BRB237_S18_L001_R1_001
        50.2%
        42%
        0.7
        BRB237_S18_L001_R2_001
        46.3%
        43%
        0.7
        BRB238_S22_L001_R1_001
        58.9%
        43%
        1.2
        BRB238_S22_L001_R2_001
        57.5%
        43%
        1.2
        BRB239_S14_L001_R1_001
        56.5%
        47%
        1.1
        BRB239_S14_L001_R2_001
        52.6%
        47%
        1.1
        BRB240_S15_L001_R1_001
        55.5%
        46%
        1.0
        BRB240_S15_L001_R2_001
        50.0%
        46%
        1.0
        BRB241_S3_L001_R1_001
        36.6%
        41%
        0.3
        BRB241_S3_L001_R2_001
        40.2%
        42%
        0.3
        BRB242_S16_L001_R1_001
        46.9%
        47%
        0.6
        BRB242_S16_L001_R2_001
        43.3%
        47%
        0.6
        BRB246_S4_L001_R1_001
        48.2%
        43%
        0.7
        BRB246_S4_L001_R2_001
        50.5%
        43%
        0.7
        BRB247_S17_L001_R1_001
        53.2%
        47%
        0.8
        BRB247_S17_L001_R2_001
        49.7%
        47%
        0.8
        BRB249_S19_L001_R1_001
        53.8%
        42%
        1.0
        BRB249_S19_L001_R2_001
        50.1%
        42%
        1.0
        BRB252_S5_L001_R1_001
        50.5%
        43%
        0.8
        BRB252_S5_L001_R2_001
        53.0%
        43%
        0.8
        BRB253_S18_L001_R1_001
        57.7%
        46%
        1.2
        BRB253_S18_L001_R2_001
        54.2%
        46%
        1.2
        BRB254_S19_L001_R1_001
        63.2%
        45%
        1.8
        BRB254_S19_L001_R2_001
        60.0%
        45%
        1.8
        BRB255_S20_L001_R1_001
        58.5%
        44%
        1.3
        BRB255_S20_L001_R2_001
        54.5%
        44%
        1.3
        BRB257_S21_L001_R1_001
        61.1%
        45%
        1.4
        BRB257_S21_L001_R2_001
        58.4%
        45%
        1.4
        BRB258_S20_L001_R1_001
        61.1%
        44%
        1.4
        BRB258_S20_L001_R2_001
        54.0%
        44%
        1.4
        BRB259_S21_L001_R1_001
        55.2%
        42%
        0.9
        BRB259_S21_L001_R2_001
        52.4%
        42%
        0.9
        BRB260_S6_L001_R1_001
        50.6%
        43%
        0.8
        BRB260_S6_L001_R2_001
        53.2%
        44%
        0.8
        BRB261_S22_L001_R1_001
        49.8%
        42%
        0.7
        BRB261_S22_L001_R2_001
        46.5%
        42%
        0.7
        BRB264_S7_L001_R1_001
        55.3%
        44%
        1.0
        BRB264_S7_L001_R2_001
        53.4%
        44%
        1.0
        BRB265_S8_L001_R1_001
        54.3%
        44%
        0.9
        BRB265_S8_L001_R2_001
        52.5%
        44%
        0.9
        BRB268_S22_L001_R1_001
        54.9%
        46%
        1.0
        BRB268_S22_L001_R2_001
        51.5%
        46%
        1.0
        BRB270_S9_L001_R1_001
        49.3%
        43%
        0.7
        BRB270_S9_L001_R2_001
        50.2%
        43%
        0.7
        BRB271_S10_L001_R1_001
        43.4%
        43%
        0.5
        BRB271_S10_L001_R2_001
        45.4%
        43%
        0.5
        BRB272_S11_L001_R1_001
        42.0%
        42%
        0.5
        BRB272_S11_L001_R2_001
        45.6%
        42%
        0.5
        BRB273_S23_L001_R1_001
        53.4%
        45%
        0.9
        BRB273_S23_L001_R2_001
        51.3%
        45%
        0.9
        BRB275_S24_L001_R1_001
        54.2%
        47%
        1.0
        BRB275_S24_L001_R2_001
        50.0%
        47%
        1.0
        BRB276_S1_L001_R1_001
        41.4%
        44%
        0.5
        BRB276_S1_L001_R2_001
        42.5%
        45%
        0.5
        BRB279_S12_L001_R1_001
        62.0%
        44%
        1.4
        BRB279_S12_L001_R2_001
        58.1%
        44%
        1.4
        BRB281_S2_L001_R1_001
        46.2%
        46%
        0.6
        BRB281_S2_L001_R2_001
        45.2%
        46%
        0.6
        BRB282_S3_L001_R1_001
        50.0%
        47%
        0.7
        BRB282_S3_L001_R2_001
        45.5%
        47%
        0.7
        BRB283_S4_L001_R1_001
        39.1%
        43%
        0.4
        BRB283_S4_L001_R2_001
        41.4%
        43%
        0.4
        BRB284_S23_L001_R1_001
        57.7%
        43%
        1.2
        BRB284_S23_L001_R2_001
        53.8%
        43%
        1.2
        BRB286_S5_L001_R1_001
        47.1%
        46%
        0.7
        BRB286_S5_L001_R2_001
        47.3%
        46%
        0.7
        BRB287_S6_L001_R1_001
        44.8%
        45%
        0.6
        BRB287_S6_L001_R2_001
        45.2%
        45%
        0.6
        BRB288_S7_L001_R1_001
        44.3%
        45%
        0.6
        BRB288_S7_L001_R2_001
        45.0%
        45%
        0.6
        BRB28_S8_L001_R1_001
        50.1%
        44%
        0.9
        BRB28_S8_L001_R2_001
        46.0%
        45%
        0.9
        BRB290_S24_L001_R1_001
        58.6%
        44%
        1.1
        BRB290_S24_L001_R2_001
        52.4%
        44%
        1.1
        BRB2_S1_L001_R1_001
        37.0%
        41%
        0.4
        BRB2_S1_L001_R2_001
        38.2%
        41%
        0.4
        BRB34_S13_L001_R1_001
        60.2%
        44%
        1.2
        BRB34_S13_L001_R2_001
        56.6%
        44%
        1.2
        BRB37_S9_L001_R1_001
        39.6%
        42%
        0.5
        BRB37_S9_L001_R2_001
        36.7%
        42%
        0.5
        BRB38_S4_L001_R1_001
        36.2%
        42%
        0.4
        BRB38_S4_L001_R2_001
        38.6%
        42%
        0.4
        BRB39_S5_L001_R1_001
        49.4%
        43%
        0.8
        BRB39_S5_L001_R2_001
        50.7%
        43%
        0.8
        BRB3_S1_L001_R1_001
        39.7%
        43%
        0.4
        BRB3_S1_L001_R2_001
        41.5%
        43%
        0.4
        BRB42_S6_L001_R1_001
        43.6%
        43%
        0.5
        BRB42_S6_L001_R2_001
        45.1%
        43%
        0.5
        BRB44_S10_L001_R1_001
        39.9%
        42%
        0.5
        BRB44_S10_L001_R2_001
        38.8%
        42%
        0.5
        BRB46_S7_L001_R1_001
        44.1%
        43%
        0.6
        BRB46_S7_L001_R2_001
        45.8%
        43%
        0.6
        BRB47_S8_L001_R1_001
        52.6%
        43%
        0.9
        BRB47_S8_L001_R2_001
        51.8%
        43%
        0.9
        BRB48_S14_L001_R1_001
        60.9%
        43%
        1.3
        BRB48_S14_L001_R2_001
        57.8%
        43%
        1.3
        BRB49_S15_L001_R1_001
        60.2%
        43%
        1.2
        BRB49_S15_L001_R2_001
        55.9%
        43%
        1.2
        BRB50_S16_L001_R1_001
        60.1%
        44%
        1.2
        BRB50_S16_L001_R2_001
        56.8%
        44%
        1.2
        BRB51_S9_L001_R1_001
        50.6%
        44%
        0.7
        BRB51_S9_L001_R2_001
        49.1%
        44%
        0.7
        BRB52_S10_L001_R1_001
        52.3%
        44%
        0.9
        BRB52_S10_L001_R2_001
        52.0%
        44%
        0.9
        BRB53_S17_L001_R1_001
        59.5%
        44%
        1.1
        BRB53_S17_L001_R2_001
        56.7%
        44%
        1.1
        BRB55_S11_L001_R1_001
        34.4%
        41%
        0.3
        BRB55_S11_L001_R2_001
        35.0%
        41%
        0.3
        BRB57_S12_L001_R1_001
        33.3%
        40%
        0.3
        BRB57_S12_L001_R2_001
        35.4%
        40%
        0.3
        BRB58_S13_L001_R1_001
        58.5%
        43%
        1.3
        BRB58_S13_L001_R2_001
        53.1%
        43%
        1.3
        BRB59_S14_L001_R1_001
        54.5%
        43%
        1.0
        BRB59_S14_L001_R2_001
        49.7%
        43%
        1.0
        BRB5_S2_L001_R1_001
        45.6%
        45%
        0.6
        BRB5_S2_L001_R2_001
        45.7%
        45%
        0.6
        BRB62_S18_L001_R1_001
        58.6%
        43%
        1.1
        BRB62_S18_L001_R2_001
        55.7%
        43%
        1.1
        BRB68_S19_L001_R1_001
        63.8%
        44%
        1.6
        BRB68_S19_L001_R2_001
        61.0%
        44%
        1.6
        BRB6_S10_L001_R1_001
        56.5%
        43%
        1.2
        BRB6_S10_L001_R2_001
        56.5%
        43%
        1.2
        BRB70_S20_L001_R1_001
        56.3%
        43%
        1.0
        BRB70_S20_L001_R2_001
        52.1%
        43%
        1.0
        BRB72_S11_L001_R1_001
        52.9%
        44%
        1.0
        BRB72_S11_L001_R2_001
        53.9%
        44%
        1.0
        BRB73_S15_L001_R1_001
        61.2%
        44%
        1.5
        BRB73_S15_L001_R2_001
        51.3%
        44%
        1.5
        BRB74_S12_L001_R1_001
        39.5%
        42%
        0.4
        BRB74_S12_L001_R2_001
        42.1%
        42%
        0.4
        BRB75_S13_L001_R1_001
        56.8%
        45%
        1.1
        BRB75_S13_L001_R2_001
        53.0%
        45%
        1.1
        BRB77_S14_L001_R1_001
        56.6%
        46%
        1.1
        BRB77_S14_L001_R2_001
        52.7%
        46%
        1.1
        BRB78_S16_L001_R1_001
        54.2%
        42%
        1.1
        BRB78_S16_L001_R2_001
        50.9%
        43%
        1.1
        BRB81_S15_L001_R1_001
        54.1%
        46%
        0.9
        BRB81_S15_L001_R2_001
        49.6%
        46%
        0.9
        BRB83_S16_L001_R1_001
        51.6%
        47%
        0.8
        BRB83_S16_L001_R2_001
        48.0%
        47%
        0.8
        BRB84_S21_L001_R1_001
        61.4%
        43%
        1.2
        BRB84_S21_L001_R2_001
        59.3%
        43%
        1.2
        BRB87_S17_L001_R1_001
        55.6%
        46%
        1.0
        BRB87_S17_L001_R2_001
        52.7%
        46%
        1.0
        BRB88_S22_L001_R1_001
        60.4%
        44%
        1.3
        BRB88_S22_L001_R2_001
        57.3%
        44%
        1.3
        BRB89_S18_L001_R1_001
        57.3%
        46%
        1.2
        BRB89_S18_L001_R2_001
        54.0%
        46%
        1.2
        BRB8_S2_L001_R1_001
        41.6%
        42%
        0.5
        BRB8_S2_L001_R2_001
        40.9%
        42%
        0.5
        BRB91_S19_L001_R1_001
        58.8%
        47%
        1.3
        BRB91_S19_L001_R2_001
        54.5%
        47%
        1.3
        BRB94_S17_L001_R1_001
        54.0%
        42%
        1.1
        BRB94_S17_L001_R2_001
        50.8%
        43%
        1.1
        BRB96_S18_L001_R1_001
        47.4%
        42%
        0.8
        BRB96_S18_L001_R2_001
        44.1%
        42%
        0.8
        BRB98_S23_L001_R1_001
        61.3%
        44%
        1.3
        BRB98_S23_L001_R2_001
        58.4%
        44%
        1.3
        BRB99_S8_L001_R1_001
        57.0%
        44%
        1.2
        BRB99_S8_L001_R2_001
        54.5%
        44%
        1.2
        BRB9_S3_L001_R1_001
        47.0%
        42%
        0.7
        BRB9_S3_L001_R2_001
        40.9%
        42%
        0.7
        BRC1341_S23_L001_R1_001
        57.6%
        44%
        1.1
        BRC1341_S23_L001_R2_001
        53.7%
        44%
        1.1
        BRC2101_S14_L001_R1_001
        67.5%
        44%
        2.0
        BRC2101_S14_L001_R2_001
        60.4%
        44%
        2.0
        OVB1_S13_L001_R1_001
        58.5%
        44%
        1.1
        OVB1_S13_L001_R2_001
        55.4%
        44%
        1.1

        FastQC

        FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

        Sequence Quality Histograms

        The mean quality value across each base position in the read. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Per Sequence Quality Scores

        The number of reads with average quality scores. Shows if a subset of reads has poor quality. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Per Base Sequence Content

        The proportion of each base position for which each of the four normal DNA bases has been called. See the FastQC help.

        Click a sample row to see a line plot for that dataset.
        Rollover for sample name
        Position: -
        %T: -
        %C: -
        %A: -
        %G: -

        Per Sequence GC Content

        The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Per Base N Content

        The percentage of base calls at each position for which an N was called. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Sequence Length Distribution

        The distribution of fragment sizes (read lengths) found. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Sequence Duplication Levels

        The relative level of duplication found for every sequence. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Overrepresented sequences

        The total amount of overrepresented sequences found in each library. See the FastQC help for further information.

        332 samples had less than 1% of reads made up of overrepresented sequences

        Adapter Content

        The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. See the FastQC help. Only samples with ≥ 0.1% adapter contamination are shown.

        No samples found with any adapter contamination > 0.1%